Mosaic fluoXAS stack with multiple detectors#

Download workflow

../_images/mosaic_stack_mdet.png

The primary workflow parameters are

Parameter

Description

Example

filenames

Paths to HDF5 files to be concatenated per group

[['/data/visitor/blc15566/ewoks/id21/RAW_DATA/GYYB27/GYYB27_roi95062_111627/GYYB27_roi95062_111627.h5'], ['/data/visitor/blc15566/ewoks/id21/RAW_DATA/GYYB27/GYYB27_roi95064_111618/GYYB27_roi95064_111618.h5']]

scan_ranges

Bliss scan numbers

[[(2, 33)], [(2, 37)]]

group_by_index

By default scans of each group in filenames are concatenated. This flag ensures scans of each index across the groups in filenames are concatenated.

True

output_root_uri

Output URI root for the virtual concatenated scans

/data/visitor/blc15566/id21/20240722/PROCESSED_DATA/ewoksconcat/GYYB27.h5

virtual_axes

Virtual axes as a combination of real positioners

{'sy': '<samy>+<sampy>', 'sz': '<samz>+<sampz>'}

positioners

Axes of the mosaic map

['sy', 'sz']

configs

Paths to the PyMca configuration files

["/data/visitor/blc15566/id21/20240722/PROCESSED_DATA/pymca/config_7_12.cfg", "/data/visitor/blc15566/id21/20240722/PROCESSED_DATA/pymca/config_7_12.cfg"]

output_root_uri

Output URI root

/data/visitor/blc15566/id21/20240722/PROCESSED_DATA/ewoksdemo/GYYB27.h5::/4.1

detector_names

Names of the XRF detectors used

["fx2_det0", "fx2_det1"]

counter_name

Name of the counter for normalization

iodet

counter_normalization_template

Template for counter normalization

180000/<instrument/{}/data>

detector_normalization_template

Template for detector normalization

0.1/<instrument/{}/live_time>